GSE120068   Details

GSE Accession GSE120068
Title INDETERMINATE-DOMAIN 4 (IDD4) coordinates immune responses with plant-growth in Arabidopsis thaliana.
Submission Date 9/17/18
Last Update Date 2/15/19
Pubmed ID 30677094
Experiment Type Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Contributor Ronny,,Voelz; Soon-Kap Kim; Jianing Mi; Alaguraj Veluchamy; Kiruthiga,G,Mariappan; Naganand Rayapuram; Jean-Michel Daviere; Patrick Achard; Salim Al-Babili; Moussa Benhamed; Salim Al-Babili; Heribert Hirt
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Organism Arabidopsis thaliana
Organism ID 3702
Organism Synonym mouse-ear cress; thale cress; thale-cress
Summary We report the transcriptome composition of idd mutant with and without flg22 treatment compared to WT (ColO). Furthermore, we provide transcriptome data of a IDD4ox line and IDD4-phospho-peptide modified versions without treatment compared to WT (ColO), respectively. In order to identify the genomic regions targeted by IDD4 in vivo, Chromatin-Immunoprecipitation (ChIP) was performed followed by deep sequencing on the Illumina High-Sequencing2000 platform (SEQ).
Overall Design Illumina high-sequencing plateform was used to analyse the transcriptome composition of the different genetic backgrounds (under treated and untreated conditions), and to analyse the chromatin fragments bound on IDD4
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