ReGEO: Restructured Gene Expression Omnibus

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No.	Details	GSE Accession	Pubmed ID	Title	Experiment Type	Organism	Timepoint Count

1	Details	GSE129486		Transcriptional responses of human synovial fibroblasts to TNF and IL-17A over time (RNA-seq Data 1)	Expression profiling by high throughput sequencing	Homo sapiens	175
2	Details	GSE108659	26679589	Analysis of differential gene expression during Bacillus subtilis spore outgrowth	Expression profiling by high throughput sequencing	Bacillus amyloliquefaciens; Bacillus subtilis	114
3	Details	GSE108664		Longitudinal Saliva Omics Responses to Immune Perturbation: A Case Study [Saliva RNA-sequencing]	Expression profiling by high throughput sequencing	Homo sapiens	100
4	Details	GSE108666		Longitudinal Saliva Omics Responses to Immune Perturbation: A Case Study [saliva small RNA-seq]	Non-coding RNA profiling by high throughput sequencing	Homo sapiens	100
5	Details	GSE134508		Neurogenomic insights into paternal care and its relation to territorial aggression	Expression profiling by high throughput sequencing	Gasterosteus aculeatus	79
6	Details	GSE101466		Type I IFN and not TNF, is essential for cyclic di-nucleotide-elicited CTL by a cytosolic cross-presentation pathway	Expression profiling by array	Mus musculus	70
7	Details	GSE118657	30015668	Time series gene expression in critically ill patients: PREVAIL study	Expression profiling by array	Homo sapiens	69
8	Details	GSE7124		Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance	Expression profiling by array	Glycine max; Phytophthora sojae	66
9	Details	GSE124024		Serum Reponse of CF1 primary MEFs , E13	Expression profiling by high throughput sequencing	Mus musculus	63
10	Details	GSE9479	17638852	Expression data from skin biopsies in cutaneous T-cell lymphoma	Expression profiling by array	Homo sapiens	62
11	Details	GSE70328	17638852	caArray_kuppe-00390: Broad: Lesional gene expression profiling in cutaneous T-cell lymphoma reveals natural clusters associated with disease outcome	Expression profiling by array	Homo sapiens	62
12	Details	GSE24616	21150997	A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns	Expression profiling by array	Danio rerio	61
13	Details	GSE47353		Global Analyses of Human Immune Variation Reveal Baseline Predictors of Postvaccination Responses	Expression profiling by array	Homo sapiens	60
14	Details	GSE129014		Automated High Frequency Sampling of Stem Cell Differentiation Reveals Early Stage Divergence of Human and Mouse Gene Expression Kinetics	Expression profiling by high throughput sequencing	Homo sapiens; Mus musculus	60
15	Details	GSE80474	27918582	Investigating Conservation of the Cell-Cycle-Regulated Transcriptional Program in the Fungal Pathogen, Cryptococcus neoformans	Expression profiling by high throughput sequencing	Cryptococcus neoformans var. grubii; Saccharomyces cerevisiae	50
16	Details	GSE44743	23388120	Expression data from Zea mays developmental series.	Expression profiling by array	Zea mays	50
17	Details	GSE124533		Gene expression signatures after immunisation with a range of live, inactivated and adjuvanted vaccines (BIOVACSAFE protocols 305A, 305B and 305C)	Expression profiling by array	Homo sapiens	49
18	Details	GSE11923	19343201	High-temporal resolution profiling of mouse liver	Expression profiling by array	Mus musculus	48
19	Details	GSE11922	19343201	High temporal resolution profiling of NIH3T3 cells	Expression profiling by array	Mus musculus	48
20	Details	GSE116163		DNA methylation oscillations at CpG poor enhancers in primed embryonic stem cells [amplicon-Seq]	Methylation profiling by high throughput sequencing	Mus musculus	48
21	Details	GSE4301	15004229	Diverse and specific gene expression responses to stresses in cultured human cells.	Expression profiling by array	Homo sapiens	47
22	Details	GSE68951	26078336	miRNA Profiles in lung cancer patients and controls with other non-cancer lung diseases	Non-coding RNA profiling by array	Homo sapiens	47
23	Details	GSE3497	12058064	Cell division cycle in a human cancer cell line (HeLa)	Expression profiling by array	Homo sapiens	47
24	Details	GSE21372	21356103	Gene expression throughout vertebrate embryogenesis	Expression profiling by array	Fundulus heteroclitus	40
25	Details	GSE84152		Early whole blood transcriptional signatures are associated with severity of lung inflammation in cynomolgus macaques with Mycobacterium tuberculosis infection	Expression profiling by array	Homo sapiens; Macaca fascicularis	38
26	Details	GSE31012	22992520	RNA-seq of Pacific oyster Crassostrea gigas under different developmental stages and stress treatments	Expression profiling by high throughput sequencing	Crassostrea gigas	38
27	Details	GSE32543	22300536	Human and murine serum reactivity to specific histone posttranslational modifications in neutrophil extracellular traps	Protein profiling by protein array	Homo sapiens; Mus musculus	38
28	Details	GSE129916		Comparative Physiological, Metabolomic, and Transcriptomic Analyses Reveal Developmental Stage-Dependent Effects of Cluster Bagging on Phenolic Metabolism in Cabernet Sauvignon Grape Berries	Expression profiling by high throughput sequencing	Vitis vinifera	38
29	Details	GSE7015	17362910	Identif. of oscillatory genes in somitogenesis from functional genomic analysis of a human mesenchymal stem cell model	Expression profiling by array	Homo sapiens	38
30	Details	GSE70305		Molecular Characterization of Acute Cellular Rejection Occurring during Intentional Immunosuppression Withdrawal in Liver Transplantation	Expression profiling by array	Homo sapiens	37

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