ReGEO: Restructured Gene Expression Omnibus

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No.	Details	GSE Accession	Pubmed ID	Title	Experiment Type	Organism	Timepoint Count

31	Details	GSE9302	17043222	A perturbation in the system leads to period doubling	Expression profiling by array	Saccharomyces cerevisiae; Schizosaccharomyces pombe	37
32	Details	GSE70305		Molecular Characterization of Acute Cellular Rejection Occurring during Intentional Immunosuppression Withdrawal in Liver Transplantation	Expression profiling by array	Homo sapiens	37
33	Details	GSE81317		Disruption of Trim9 function abrogates macrophage motility in vivo	Expression profiling by array	Danio rerio	36
34	Details	GSE31068	22147733	Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture	Expression profiling by array	Streptomyces coelicolor; Streptomyces coelicolor A3(2)	36
35	Details	GSE36212	22936248	Promoter activity profiling throughout the Drosophila life cycle reveals role of transposons in regulatory innovation	Expression profiling by high throughput sequencing	Drosophila melanogaster	36
36	Details	GSE75694		G1/S cyclin-CDKs promote cell-cycle transcription by relieving the inhibition of a pulse-generating transcription factor network	Expression profiling by array; Third-party reanalysis	Saccharomyces cerevisiae; Schizosaccharomyces pombe	36
37	Details	GSE3431	16254148	Logic of the yeast metabolic cycle	Expression profiling by array	Saccharomyces cerevisiae	36
38	Details	GSE115945		Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [4C-seq]	Other	Danio rerio	35
39	Details	GSE106430		Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [RNA-Seq]	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum; Danio rerio; Oryzias latipes	35
40	Details	GSE131992		Systematic identification of metabolites controlling gene expression in E. coli	Expression profiling by high throughput sequencing	Escherichia coli	35
41	Details	GSE52005	24495909	Trivalent Inactivated Influenza Vaccine (TIV) and Live Attenuated Influenza Vaccine (LAIV) Induce Different B cell and Transcriptional Responses in Children	Expression profiling by array	Homo sapiens	34
42	Details	GSE134333		Circadian rhythms in the absence of the clock gene Bmal1	Expression profiling by high throughput sequencing	Mus musculus	33
43	Details	GSE83864		Gene Expression Network Analyses in Response to Air Pollution Exposures in the Trucking Industry	Expression profiling by array	Homo sapiens	32
44	Details	GSE60112		Time-series DNA occupancy during the yeast respiratory cycle	Genome variation profiling by genome tiling array	Saccharomyces cerevisiae	32
45	Details	GSE12289	19323838	Identifying Significant Temporal Variation in Time Course Microarray Data Without Replicates	Expression profiling by array	Rattus norvegicus	32
46	Details	GSE96997	28934013	Investigating global transcript dynamics in mitotically arrested budding yeast cells	Expression profiling by array	Saccharomyces cerevisiae; Schizosaccharomyces pombe	30
47	Details	GSE107558		Ivy Glioblastoma Atlas Project (SNP)	SNP genotyping by SNP array	Homo sapiens	30
48	Details	GSE75973		DNA methylation oscillations at CpG poor enhancers in primed embryonic stem cells [PBAT Bisfulfite-seq]	Methylation profiling by high throughput sequencing	Mus musculus	30
49	Details	GSE3981	15159429	Temperature acclimation	Expression profiling by array	Austrofundulus limnaeus	30
50	Details	GSE8799	18463633	Global Control of cell cycle transcription by coupled CDK and network oscillators	Expression profiling by array	Saccharomyces cerevisiae; Schizosaccharomyces pombe	30
51	Details	GSE49987	24120743	Dynamic analysis of gene expression and genome wide transcription factor binding during lineage-specification of multipotent progenitors [TC]	Expression profiling by array	Mus musculus	29
52	Details	GSE87633		Organism-level analysis of vaccination reveals networks of protection across tissues	Expression profiling by high throughput sequencing	Mus musculus	28
53	Details	GSE6186	17224916	Whole Genome Drosophila Embryogenesis Time Course	Expression profiling by array	Drosophila melanogaster	28
54	Details	GSE81142		mRNA sequence of individual Drosophila melanogaster (w1118) male and female flies fed with different concentrations of dimethyl sulfoxide (DMSO) over different time periods.	Expression profiling by high throughput sequencing	Drosophila melanogaster	28
55	Details	GSE75195		Kinetics of IFNa response	Expression profiling by array	Mus musculus	28
56	Details	GSE13232		Cell cycle gene expression control	Expression profiling by array	Saccharomyces cerevisiae	27
57	Details	GSE138023		Long term cellular adaptation of protein levels to metabolic flux, coordinated by cyclic transcription	Expression profiling by high throughput sequencing; Other	Saccharomyces cerevisiae	27
58	Details	GSE36040	23180765	Diurnal and circadian gene expression profile of leaf throughout the entire growth of rice in the field	Expression profiling by array	Oryza sativa; Oryza sativa Japonica Group	27
59	Details	GSE84712		RNA-seq of Human neural progenitor cells exposed to lead (Pb) reveals transcriptome dynamics, splicing alterations and Pb disease risk associations	Expression profiling by high throughput sequencing	Homo sapiens	27
60	Details	GSE74243		Genome wide gene expression during lung development in three inbred mouse strains	Expression profiling by array	Mus musculus	26

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