GSE60112   Details

GSE Accession GSE60112
Title Time-series DNA occupancy during the yeast respiratory cycle
Submission Date 2014-08-05
Last Update Date 2014-08-07
Pubmed ID
Experiment Type Genome variation profiling by genome tiling array
Contributor Cornelia,,Amariei; Douglas,B,Murray
Contact Name Douglas,Brian,Murray
Contact E-mail dougie@ttck.keio.ac.jp
Organization Name Institute for Advanced Biosciences
Country Japan
Organism Saccharomyces cerevisiae
Organism ID
Organism Synonym S. cerevisiae;brewer's yeast;baker's yeast
Summary We use metabolically synchronous, continuously-grown yeast cultures to measure DNA occupancy and track the global patterns with respect to the metabolic state of the culture, showing a genome-wide nucleosome focusing in the reductive phase, followed by clearance of the promoter regions
Overall Design 32 timepoints protein-bound (pDNA) vs. genomic (gDNA) over 3 respiratory cycles + 3 MNase-digested naked DNA control samples.
Platform ID
Timepoint Count 32
Timepoints gsm: [_tp1, _tp2, _tp3, _tp4, _tp5, _tp6, _tp7, _tp8, _tp9, _tp10, _tp11, _tp12, _tp13, _tp14, _tp15, _tp16, _tp17, _tp18, _tp19, _tp20, _tp21, _tp22, _tp23, _tp24, _tp25, _tp26, _tp27, _tp28, _tp30, _tp31, _tp32, _tp33]
Disease thrombocytopenia-absent radius syndrome;
congenital disorder;
thrombocytopenia
Disease ID 14699;
759;
1588