GSE31012   Details

GSE Accession GSE31012
Title RNA-seq of Pacific oyster Crassostrea gigas under different developmental stages and stress treatments
Submission Date 2011-07-28
Last Update Date 2013-05-23
Pubmed ID 22992520
Experiment Type Expression profiling by high throughput sequencing
Contributor Guofan,,Zhang; Xiaodong Fang; L Li; F Xu; X Wang; L Zhang
Contact Name Yabing Zhu
Contact E-mail zhuyabing@genomics.org.cn
Organization Name BGI-Shenzhen
Country China
Organism Crassostrea gigas
Organism ID
Organism Synonym Pacific oyster
Summary Deep sequencing of samples from different development stages, different adult organs and different stress treatments of Pacific oyster Crassostrea gigas
Overall Design Samples of 38 developmental stages from egg to juvenile were analyzed using single-end 49 bp RNA-seq. Two libraries mixed by RNAs from different developmental stages were analyzed using paired-end 90 bp RNA-seq. A total of 11 samples mainly from 8 organs (mantle, gill,adductor muscle, digestive gland, hemocyte, labial palp, female gonad and male gonad) were analyzed using paired-end 90 bp RNA-seq. At the same time, single-end 49 bp RNA-seq was conducted on 61 samples collected from adult oysters subjected to 9 types of environmental stressors (exposure to air, salinity, temperature, and exposure to metals).
Platform ID
Timepoint Count 38
Timepoints gse: [Timepoints, 38]
Disease thrombocytopenia-absent radius syndrome;
congenital disorder;
thrombocytopenia
Disease ID 14699;
759;
1588